Webb7 feb. 2024 · Plot gene expression in reduced dimension. Description. Plot the gene in reduced dimensional space. Usage plotGeneCount(curve, ...) ## S4 method for signature 'SlingshotDataSet' plotGeneCount( curve, counts = NULL, gene = NULL, clusters = NULL, models = NULL, title = NULL ) ## S4 method for signature 'PseudotimeOrdering' … Webb3 dec. 2024 · The histogram provided by 'AUCell_buildRankings()' allows to quickly check this distribution. 'plotGeneCount(exprMatrix)' allows to obtain only the plot before building the rankings. Value. Quantiles with the number of genes detected by cell (invisible). his result is also printed if verbose=TRUE.
AUCell source: R/01_buildRankings.R - rdrr.io
WebbAs you can see through the dynverse guidelines app, it’s relatively fast and can detect linear, bifurcating and tree trajectories accurately. Note that it won’t detect any disconnected or cyclic trajectories. That’s why we have to filter out the cells first, so that only the connected clusters are kept. WebbThese plots can also be produced #' with the function \code{\link{plotGeneCount}}. #' @param nCores Number of cores to use for computation. #' @param verbose Should the function show progress messages? (TRUE / FALSE) #' @param assayName Name of the assay containing the expression matrix (e.g. in \link ... i\u0027m a celebrity get me out of here season 19
tradeSeq: trajectory-based differential expression analysis for ...
WebbPackage ‘tradeSeq’ April 8, 2024 Type Package Title trajectory-based differential expression analysis for sequencing data Date 2024-03-17 Version 1.12.0 Webb1 dec. 2024 · plotGeneCount(exprMatrix) allows to obtain only the plot before building the rankings. Since the rankings are created individually for each cell, in principle, it is … Webb8 nov. 2024 · The histogram provided by 'AUCell_buildRankings()' allows to quickly check this distribution. 'plotGeneCount(exprMatrix)' allows to obtain only the plot before … i\u0027m a celebrity get me out of here uk